Progressive multifocal leukoencephalopathy genetic risk variants for pharmacovigilance of immunosuppressant therapies

Eli Hatchwell , Edward Smith , Shapour Jalilzadeh , Christopher Bruno , Yassine Taoufik (1) , Houria Hendel-Chavez (1) , Roland Liblau , David Brassat , Guillaume Martin-Blondel , Heinz Wiendl , Nicholas Schwab , Irene Cortese , Maria Chiara Monaco , Luisa Imberti , Ruggero Capra , Jorge Oksenberg , Jacques Gasnault (1) , Bruno Stankoff (2) , Todd Richmond , David Rancour , Igor Koralnik , Barbara Hanson , Eugene Major , Christina Chow , Peggy Eis

1 INTIM - Immunologie intégrative des tumeurs et immunothérapie des cancers
2 ICM - Institut du Cerveau = Paris Brain Institute

Background Progressive multifocal leukoencephalopathy (PML) is a rare and often lethal brain disorder caused by the common, typically benign polyomavirus 2, also known as JC virus (JCV). In a small percentage of immunosuppressed individuals, JCV is reactivated and infects the brain, causing devastating neurological defects. A wide range of immunosuppressed groups can develop PML, such as patients with: HIV/AIDS, hematological malignancies (e.g., leukemias, lymphomas, and multiple myeloma), autoimmune disorders (e.g., psoriasis, rheumatoid arthritis, and systemic lupus erythematosus), and organ transplants. In some patients, iatrogenic (i.e., drug-induced) PML occurs as a serious adverse event from exposure to immunosuppressant therapies used to treat their disease (e.g., hematological malignancies and multiple sclerosis). While JCV infection and immunosuppression are necessary, they are not sufficient to cause PML. Methods We hypothesized that patients may also have a genetic susceptibility from the presence of rare deleterious genetic variants in immune-relevant genes (e.g., those that cause inborn errors of immunity). In our prior genetic study of 184 PML cases, we discovered 19 candidate PML risk variants. In the current study of another 152 cases, we validated 4 of 19 variants in both population controls (gnomAD 3.1) and matched controls (JCV+ multiple sclerosis patients on a PML-linked drug ≥ 2 years). Results The four variants, found in immune system genes with strong biological links, are: C8B , 1-57409459-C-A, rs139498867; LY9 (alias SLAMF3 ), 1-160769595-AG-A, rs763811636; FCN2 , 9-137779251-G-A, rs76267164; STXBP2 , 19-7712287-G-C, rs35490401. Carriers of any one of these variants are shown to be at high risk of PML when drug-exposed PML cases are compared to drug-exposed matched controls: P value = 3.50E-06, OR = 8.7 [3.7–20.6]. Measures of clinical validity and utility compare favorably to other genetic risk tests, such as BRCA1 and BRCA2 screening for breast cancer risk and HLA-B * 15:02 pharmacogenetic screening for pharmacovigilance of carbamazepine to prevent Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis. Conclusion For the first time, a PML genetic risk test can be implemented for screening patients taking or considering treatment with a PML-linked drug in order to decrease the incidence of PML and enable safer use of highly effective therapies used to treat their underlying disease.

Keywords: immunodeficiency; JC virus; multiple sclerosis; natalizumab; pharmacovigilance; progressive multifocal leukoencephalopathy; PML; serious adverse event

Domains: Life Sciences [q-bio]

Eli Hatchwell, Edward Smith, Shapour Jalilzadeh, Christopher Bruno, Yassine Taoufik, et al.. Progressive multifocal leukoencephalopathy genetic risk variants for pharmacovigilance of immunosuppressant therapies. Frontiers in Neurology, 2022, 13, ⟨10.3389/fneur.2022.1016377⟩. ⟨hal-04482819⟩